About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3902434_3902832_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3902434 - 3902832
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCTGGCTGACTT
Flanking Amino Acid:
GIITIESQDGGTFSQFGGQQ
Intron Amino Acid Position:
1672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
70.2
36.9
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
80
0.68
0.7
72.7
32.1
Minor 5ss
36
-1.6
3.5
49.3
47.2
Minor BPS
41.6
-0.5
2.1
55.5
47.2

Associated Gene:

Gene:
ITGB4
Ensembl Gene ID:
ENSAPLG00000011722
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019403
3883119 - 3903161
20043
ENSAPLT00000012353
3884466 - 3903161
18696
ENSAPLT00000038616
3883119 - 3903644
20526