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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3906307_3906713_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3906307 - 3906713
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGC
5'SS Class:
major
3'SS Sequence:
TCTCGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
GAGCACTTACTG
Flanking Amino Acid:
AAERAQQHIQEKYSGTATFY
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
44.4
Major BPS
61.4
0.28
1
53
33.7
Major PPT
72
0.49
0.8
69.8
31.1
Minor 5ss
38
-1.4
3.2
52.2
44.6
Minor BPS
44.6
-0.5
1.8
43.89
41.6

Associated Gene:

Gene:
GALK1
Ensembl Gene ID:
ENSAPLG00000013366
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013916
3906235 - 3909893
3659