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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3906877_3907242_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3906877 - 3907242
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGGGGCTGACCC
Flanking Amino Acid:
RLMVESHNSLRDDYDVSCPE
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
69.9
42.1
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
30.9
-2.2
3.2
40.5
45.5
Minor BPS
42.2
-0.6
2.1
51.46
45.5

Associated Gene:

Gene:
GALK1
Ensembl Gene ID:
ENSAPLG00000013366
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013916
3906235 - 3909893
3659