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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3919589_3919666_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3919589 - 3919666
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CCTTCCTCCACC
Flanking Amino Acid:
TGGVKKPHRYRPGTVALREI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
73.4
0.53
0.8
66
34.9
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
54.3
0.12
2
66.23
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003917
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004005
3919210 - 3919794
585