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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3944710_3946316_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3944710 - 3946316
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAA
U12 Branch Point Sequence:
TCTTCTGTACCC
Flanking Amino Acid:
ETTGICPEGDECPFLHRTTG
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
59.8
0.24
1.2
61.9
33.9
Major PPT
74.6
0.55
0.9
66.3
39.5
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
50.7
0
2.3
69.26
43

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074