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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3947033_3947155_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3947033 - 3947155
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGGTAACTAACT
Flanking Amino Acid:
KILSEEPRWQDTTYVLGNYK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
79.7
0.67
0.9
73.4
37
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
48.5
-0
2.1
72.29
43.6

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074