About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3947292_3948868_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3947292 - 3948868
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
CTTATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GCTCCCTTATTT
Flanking Amino Acid:
RRRSPRKHKYRSSPCPSVKH
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.2
0.7
0.8
76
32.5
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
61.8
0.45
1.6
74.14
42.8

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074