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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3953090_3953977_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3953090 - 3953977
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTTTCTGACTC
Flanking Amino Acid:
TLPTSPTSTTILCRNSSLGS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.9
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.4
0.62
0.8
78.2
29
Minor 5ss
34.2
-1.8
2.9
48
41.7
Minor BPS
53.5
0.09
1.7
66.18
40.2

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074