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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3954179_3958435_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3954179 - 3958435
Intron Length:
4257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTTATTTACT
Flanking Amino Acid:
AEYLKSFKCQQAKMKSHSLE
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.9
42.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.3
0.66
0.8
75.3
34.2
Minor 5ss
31.5
-2.1
2.4
34.7
41
Minor BPS
60
0.4
1.9
81.9
39

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074