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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3958505_3959179_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3958505 - 3959179
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAACT
Flanking Amino Acid:
QEQPLLQPKQDILGILPVGS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.7
0.67
0.9
76.7
36.8
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
64.1
0.52
1.9
88.42
36.6

Associated Gene:

Gene:
UNK
Ensembl Gene ID:
ENSAPLG00000014891
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015552
3938463 - 3966536
28074