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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3979930_3980203_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3979930 - 3980203
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGCA
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTCTCACACCT
Flanking Amino Acid:
LPKMVSEALKSGTTEWFHMK
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
57.6
41.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
33.7
-1.9
3.7
47.4
48.2
Minor BPS
44.5
-0.3
2
66.17
44.3

Associated Gene:

Gene:
UNC13D
Ensembl Gene ID:
ENSAPLG00000015199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022639
3974360 - 3985237
10878
ENSAPLT00000015883
3974360 - 3987179
12820