Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3980705_3981291_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3980705 - 3981291

Intron Length:

587

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGACAC

5'SS Class:

major

3'SS Sequence:

TCCTTCTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGGACAA

U12 Branch Point Sequence:

CCACCAAGGACA

Flanking Amino Acid:

WVQERLRPEQKAELAESFQS

Intron Amino Acid Position:

371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

62.1

38.7

Major BPS

43.8

-0.3

1.1

44.5

38.7

Major PPT

0.68

0.7

72.7

32.1

Minor 5ss

25.4

-2.8

3.1

32.1

42.7

Minor BPS

39.1

-0.8

1.8

43.81

37.5

Associated Gene:

Gene:

UNC13D

Ensembl Gene ID:

ENSAPLG00000015199

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015883

3974360 - 3987179

12820

ENSAPLT00000022639

3974360 - 3985237

10878