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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3984956_3985204_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3984956 - 3985204
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCGAG
U12 Branch Point Sequence:
GTGGTGGCGAGG
Flanking Amino Acid:
DLSHRFSKQELALLYEEVLY
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
70
40.8
Major BPS
38
-0.7
1.6
29.6
44.5
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
33
-1.9
3.6
46.7
48.6
Minor BPS
25.5
-2
2.3
25.71
36.5

Associated Gene:

Gene:
UNC13D
Ensembl Gene ID:
ENSAPLG00000015199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015883
3974360 - 3987179
12820