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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3998082_3998298_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3998082 - 3998298
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTCTGAGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTGACAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
CTTTCCTGACAG
Flanking Amino Acid:
GYPYPPPPPGNFILPLLLGV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.3
47.1
41.8
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
51.4
0.03
1.7
61
39.3
Minor 5ss
33
-1.9
3.2
38.6
40.8
Minor BPS
50.2
-0.1
2
61.48
45.9

Associated Gene:

Gene:
WBP2
Ensembl Gene ID:
ENSAPLG00000015622
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016288
3997916 - 4001938
4023