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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3998420_3998718_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3998420 - 3998718
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGAG
5'SS Class:
major
3'SS Sequence:
TTTACTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCTTTACTT
Flanking Amino Acid:
GQRMLQVASQASRGEVPNGA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.4
41.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.2
0.75
0.7
81.9
30
Minor 5ss
26.8
-2.7
3.7
36.9
47.7
Minor BPS
70.1
0.71
1.5
84.32
36.9

Associated Gene:

Gene:
WBP2
Ensembl Gene ID:
ENSAPLG00000015622
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016288
3997916 - 4001938
4023