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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4000552_4001106_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4000552 - 4001106
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAACACCC
Flanking Amino Acid:
KGSVFLTPYRVIFVSKGKDA
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
41.2
-0.6
2.3
62.3
42.3

Associated Gene:

Gene:
WBP2
Ensembl Gene ID:
ENSAPLG00000015622
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016288
3997916 - 4001938
4023