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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4001216_4001879_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4001216 - 4001879
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TGTAACACAATA
Flanking Amino Acid:
GGGVIINNSESVLMTYDHVE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
77.5
0.62
0.9
71.4
38.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
45.3
-0.3
1.9
59.85
39.3

Associated Gene:

Gene:
WBP2
Ensembl Gene ID:
ENSAPLG00000015622
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016288
3997916 - 4001938
4023