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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4012731_4014194_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4012731 - 4014194
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTCGTGGG
5'SS Class:
major
3'SS Sequence:
GCGTTGAGGCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGTTGAG
U12 Branch Point Sequence:
TCCGCCGCCACC
Flanking Amino Acid:
LDGALAVPGLPDG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
55.5
45.9
Major BPS
48
-0.1
1.6
46.5
47
Major PPT
48.7
-0
1.1
39.6
43.7
Minor 5ss
16.6
-3.9
3.5
15
28.6
Minor BPS
39.2
-0.8
2.5
49.59
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018146
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018036
4007131 - 4014204
7074