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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4019936_4020258_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4019936 - 4020258
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
GTTCCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
GGGTTTGCAGCT
Flanking Amino Acid:
SVTWVFHQLLNMREPVFEFV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.2
35.6
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
83
0.74
0.8
76.8
31.7
Minor 5ss
36
-1.6
3
49.6
40.5
Minor BPS
38.9
-0.7
2.1
52.89
42.4

Associated Gene:

Gene:
MRPL38
Ensembl Gene ID:
ENSAPLG00000015690
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028152
4019799 - 4024505
4707
ENSAPLT00000016352
4019799 - 4023436
3638
ENSAPLT00000014987
4019799 - 4024383
4585