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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4020396_4020794_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4020396 - 4020794
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATTTGG
5'SS Class:
major
3'SS Sequence:
TGTCTCGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
TTCACCTCAGCT
Flanking Amino Acid:
DFSEDVRPTPCHSLKMRTFS
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
64.3
42.4
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
78.4
0.64
0.9
69.3
41.7
Minor 5ss
39.8
-1.1
2.8
47
43.6
Minor BPS
57
0.3
1.9
77.31
44.7

Associated Gene:

Gene:
MRPL38
Ensembl Gene ID:
ENSAPLG00000015690
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016352
4019799 - 4023436
3638
ENSAPLT00000014987
4019799 - 4024383
4585
ENSAPLT00000028152
4019799 - 4024505
4707