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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4023472_4024310_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4023472 - 4024310
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGATGTCC
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTCTCCTGAAGC
Flanking Amino Acid:
IPAGSPTLWFSALCRRAAPL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.1
51.1
33.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
83.5
0.75
0.7
75.7
32.8
Minor 5ss
35.2
-1.7
3.3
48.2
42
Minor BPS
64.8
0.45
1.8
75.11
41.5

Associated Gene:

Gene:
MRPL38
Ensembl Gene ID:
ENSAPLG00000015690
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014987
4019799 - 4024383
4585