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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4023488_4024448_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4023488 - 4024448
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTCATAGA
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAG
U12 Branch Point Sequence:
TCCCCCTTCAGC
Flanking Amino Acid:
LKSSLGWAGGLSPFPAALCR
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.4
51.7
44.4
Major BPS
51.1
0.03
1.6
63
43.2
Major PPT
74.8
0.56
1
75.8
26.7
Minor 5ss
19
-3.6
3.3
16.8
27.9
Minor BPS
48.7
-0.1
2.1
59.26
46

Associated Gene:

Gene:
MRPL38
Ensembl Gene ID:
ENSAPLG00000015690
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028152
4019799 - 4024505
4707