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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4029401_4029491_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4029401 - 4029491
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTGTTTCCACA
Flanking Amino Acid:
APLQAAPQLQAEFPAQGSLH
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81
0.7
0.8
75.9
32.8
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
45.3
-0.3
2
58
42.5

Associated Gene:

Gene:
FBF1
Ensembl Gene ID:
ENSAPLG00000015809
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032946
4024164 - 4037918
13755
ENSAPLT00000016519
4024164 - 4037918
13755