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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4029825_4030011_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4029825 - 4030011
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTTTC
5'SS Class:
major
3'SS Sequence:
TTTATCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCC
Flanking Amino Acid:
GDSPRDASAKGPAAASPAMQ
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
85.5
29
Minor 5ss
45
-0.5
2.7
52.3
45
Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:
FBF1
Ensembl Gene ID:
ENSAPLG00000015809
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032946
4024164 - 4037918
13755
ENSAPLT00000016519
4024164 - 4037918
13755