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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4037492_4037810_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4037492 - 4037810
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CATTTTGTAACA
Flanking Amino Acid:
MATKSKKSLRG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
80.6
0.69
0.7
76.6
25.6
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
54.5
0.14
2
67.28
39.8

Associated Gene:

Gene:
FBF1
Ensembl Gene ID:
ENSAPLG00000015809
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016519
4024164 - 4037918
13755