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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4041748_4042736_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4041748 - 4042736
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
GCCCTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
CTTGCTGTAACC
Flanking Amino Acid:
AKKSPLNKTEVHESFHKHLK
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
78.3
0.64
0.8
72
32.6
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
54.2
0.11
2.1
69.26
43

Associated Gene:

Gene:
ACOX1
Ensembl Gene ID:
ENSAPLG00000016081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016817
4041697 - 4059942
18246