About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4044133_4044646_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4044133 - 4044646
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTTTGAAAT
Flanking Amino Acid:
LVEAYKARAARLVEAAAKNL
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
32.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.5
0.51
1
70.7
39.1
Minor 5ss
35.5
-1.6
2.8
42.4
44.3
Minor BPS
60.8
0.42
1.5
77.37
39.2

Associated Gene:

Gene:
ACOX1
Ensembl Gene ID:
ENSAPLG00000016081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016817
4041697 - 4059942
18246