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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4044827_4045047_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4044827 - 4045047
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
ENTVMMLQTARFLIKSYNQV
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.3
0.91
0.7
88.7
27
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
ACOX1
Ensembl Gene ID:
ENSAPLG00000016081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016817
4041697 - 4059942
18246