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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4047912_4048436_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4047912 - 4048436
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
ACCACTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTTCTGACT
Flanking Amino Acid:
VTSIKWWPGGLGKTSNHAIV
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.3
76.2
39.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69.8
0.45
0.9
62
34
Minor 5ss
37.7
-1.4
3.3
48.5
41.2
Minor BPS
66.3
0.59
1.6
87.21
31.8

Associated Gene:

Gene:
ACOX1
Ensembl Gene ID:
ENSAPLG00000016081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016817
4041697 - 4059942
18246