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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4063202_4064659_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4063202 - 4064659
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
GGTGAGAATCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTCCCGTTTATA
Flanking Amino Acid:
MVLGEAEHREVIKARILTCV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
53.2
0.07
1.1
40.6
47.1
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
47.7
-0.1
2.3
64.43
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023536
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018461
4062847 - 4064784
1938