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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4067286_4067872_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4067286 - 4067872
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
ACCTTTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
CTACCTTTACCA
Flanking Amino Acid:
LVALKKIRLDSETEGVPSTA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
55.8
43.4
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
71.8
0.49
0.9
65.5
34.2
Minor 5ss
28.2
-2.5
3.1
31.7
36.8
Minor BPS
57
0.21
1.7
65.27
41.3

Associated Gene:

Gene:
CDK3
Ensembl Gene ID:
ENSAPLG00000000888
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000900
4066948 - 4071149
4202