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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4067951_4068408_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4067951 - 4068408
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AGTGCTTGCACT
Flanking Amino Acid:
LKELKHPNIVRLLDVVHSQK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
83.3
0.75
0.8
77.3
30.6
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
47.7
-0.1
2
67.72
43.1

Associated Gene:

Gene:
CDK3
Ensembl Gene ID:
ENSAPLG00000000888
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000900
4066948 - 4071149
4202