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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4068530_4069067_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4068530 - 4069067
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
CTTGTCTAAACT
Flanking Amino Acid:
TGEFPLSLVKNYLFQLLQGV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
82.5
0.73
0.7
80.7
24.5
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
61.4
0.43
1.8
78.66
44.1

Associated Gene:

Gene:
CDK3
Ensembl Gene ID:
ENSAPLG00000000888
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000900
4066948 - 4071149
4202