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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4070640_4071023_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4070640 - 4071023
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GAATCCTAAAGC
Flanking Amino Acid:
LDRDGRDLLAQLLLYDPSKR
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
62.5
38.1
Major BPS
70
0.5
1
67
39.8
Major PPT
82.8
0.74
0.9
80.7
31.3
Minor 5ss
28.8
-2.4
3.1
36.6
41.6
Minor BPS
51.4
0.02
2
61.3
43.5

Associated Gene:

Gene:
CDK3
Ensembl Gene ID:
ENSAPLG00000000888
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000900
4066948 - 4071149
4202