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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4080289_4080796_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4080289 - 4080796
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
AAGGCTCTCACG
Flanking Amino Acid:
TPLQESIQAQENDVTKLYME
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
41.1
-0.8
2.1
43.07
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388