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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4081080_4081509_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4081080 - 4081509
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGATTCTTATCA
Flanking Amino Acid:
QINYKLQAQKRLVEEIESKE
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
73.6
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.7
0.74
0.8
77.3
30.7
Minor 5ss
42.1
-0.9
2.6
53.2
44.1
Minor BPS
65.5
0.48
1.6
72.75
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388