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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4081661_4081775_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4081661 - 4081775
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTGCCCTTAATG
Flanking Amino Acid:
YHAVADQLDQREKTLRNISL
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
68.4
0.41
1
61.7
40
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
74.7
0.64
1.3
72.86
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388