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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4081970_4082522_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4081970 - 4082522
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAC
U12 Branch Point Sequence:
TGGTGCAAACCT
Flanking Amino Acid:
ALQDRANDLQKMKRDLVAQE
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
52.2
0.06
1.1
59
36
Major PPT
77.1
0.61
0.8
70
30.9
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
40.3
-0.6
2.4
61.12
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388