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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4086266_4087184_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4086266 - 4087184
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCTTCCCCACTT
Flanking Amino Acid:
MVSDLLLQLENEEKAVKQAE
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
68
0.4
0.9
61
40
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
48.2
-0
2.1
72.68
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388