About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4088202_4088746_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4088202 - 4088746
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GCTGCCATGAGG
Flanking Amino Acid:
DVQSVRREYEDFKSKELLSQ
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
44.1
-0.6
2
47.97
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388