About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4090750_4091369_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4090750 - 4091369
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TTGTCCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGGCTGAAAT
Flanking Amino Acid:
KHPQATEIEKDIQQLHDRTT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
64.8
35.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
70.6
0.46
1
66.6
35.6
Minor 5ss
28.8
-2.4
3
29
36.8
Minor BPS
48.9
-0
2.1
71.51
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388