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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4092066_4093194_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4092066 - 4093194
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAATCGCA
5'SS Class:
major
3'SS Sequence:
CTCCCACCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CTGCTCCCACCC
Flanking Amino Acid:
CRVSGPRRPLGSSTNDLAVL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
61.3
42
Major BPS
50
0
1.2
61.8
35.9
Major PPT
69.7
0.44
0.8
65.9
28.9
Minor 5ss
25.9
-2.8
4.1
30.6
42.8
Minor BPS
40
-0.7
2
48.06
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001088
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001173
4075908 - 4093295
17388