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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4109044_4109358_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4109044 - 4109358
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTGTCCCCATTT
Flanking Amino Acid:
AVREDLKPDQKQREHSLEGD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
77
0.61
0.8
71.7
32.6
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
48.2
-0
2.1
72.95
44.1

Associated Gene:

Gene:
SRP68
Ensembl Gene ID:
ENSAPLG00000002532
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040611
4105263 - 4118723
13461
ENSAPLT00000002607
4104540 - 4116090
11551