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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4122257_4123319_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4122257 - 4123319
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CCTTCCTCCACG
Flanking Amino Acid:
SFTLATVSLDRYLAIRYPLH
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
71.2
0.48
0.8
65.7
29.1
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
50.3
-0.1
2.1
59.08
48.4

Associated Gene:

Gene:
GALR2
Ensembl Gene ID:
ENSAPLG00000003239
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003291
4121916 - 4124094
2179