About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4129768_4129923_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4129768 - 4129923
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTCTCCTAATT
Flanking Amino Acid:
ERQMIKERFKGFNDGLEELC
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.54
1.1
73.1
41.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
56.2
0.27
1.7
72.09
39

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189
ENSAPLT00000003410
4129105 - 4149293
20189