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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4129966_4130502_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4129966 - 4130502
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATTG
Flanking Amino Acid:
NLPVFQPGVKLKDKERQMIK
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82
0.72
0.8
76.7
30.4
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
60.8
0.2
1.7
62.57
46

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003410
4129105 - 4149293
20189
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189