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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4130567_4130864_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4130567 - 4130864
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGGAGA
5'SS Class:
major
3'SS Sequence:
ATTTCAAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCCCATATCA
Flanking Amino Acid:
IEQQIQTYQRSWLKVTDYIL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.4
60.5
45.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.3
0.48
1
64.7
40
Minor 5ss
25.7
-2.8
3.1
31.4
42.4
Minor BPS
60.6
0.33
1.9
78.29
37.8

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189
ENSAPLT00000003410
4129105 - 4149293
20189