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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4130961_4131391_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4130961 - 4131391
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
NYNYILKSLEKSELIQLVAV
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033367
4129105 - 4149293
20189
ENSAPLT00000003410
4129105 - 4149293
20189
ENSAPLT00000048245
4129071 - 4149293
20223