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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4135385_4135945_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4135385 - 4135945
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCACCTTAATG
Flanking Amino Acid:
ALEEFADNIKNDPDKEYNMP
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.6
0.64
0.7
77.5
24.4
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
66.5
0.38
1.5
63.64
44.7

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003410
4129105 - 4149293
20189
ENSAPLT00000048245
4129071 - 4149293
20223
ENSAPLT00000033367
4129105 - 4149293
20189