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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_4138385_4139338_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4138385 - 4139338
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
GCCATCCCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TGCCATCCCACT
Flanking Amino Acid:
KGASNLIPMEGHEHDLRVKH
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
56.7
0.15
0.9
48.2
35.4
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
36.2
-1
2.1
52.17
42.1

Associated Gene:

Gene:
EXOC7
Ensembl Gene ID:
ENSAPLG00000003256
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003410
4129105 - 4149293
20189